PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.E00793.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family NF-YB
Protein Properties Length: 235aa    MW: 25772.7 Da    PI: 4.714
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.E00793.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB130.94.3e-4159150293
             NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 
                       re d+++Pian++ri+++vlP++a i+++ake +qecvsefisf+t+ea+ +c+r+ r+t++++d+l a+a+lGf+dy+e+l+v+l+++r  
  Migut.E00793.1.p  59 READEYMPIANITRILRRVLPTHAEIADNAKEAIQECVSEFISFITAEANRRCRRDYRRTVTSEDVLAAMASLGFDDYLESLTVFLNNHRTQ 150
                       899*************************************************************************************9975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.6E-3952152IPR009072Histone-fold
SuperFamilySSF471134.03E-3062154IPR009072Histone-fold
PfamPF008081.3E-1965128IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006157.2E-1392110No hitNo description
PRINTSPR006157.2E-13111129No hitNo description
PRINTSPR006157.2E-13130148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MEKGESSNIE YKYTRRARTS GIVIREGGAA RAAATANIAG PPLNVVAEEV NQEQQGFKRE  60
ADEYMPIANI TRILRRVLPT HAEIADNAKE AIQECVSEFI SFITAEANRR CRRDYRRTVT  120
SEDVLAAMAS LGFDDYLESL TVFLNNHRTQ QDPEHGGVGV GFLHHQQPQS APTVRPPPPL  180
LAAPTMGYYV PLPPPVAATM EDEEEFGGVT NEYILQNHGG GEGSSDGREF DPFQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g92_B2e-3259148291Transcription factor HapC (Eurofung)
4g91_B2e-3259148291Transcription factor HapC (Eurofung)
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012848273.11e-124PREDICTED: uncharacterized protein LOC105968198
SwissprotQ9SFD84e-41NFYB9_ARATH; Nuclear transcription factor Y subunit B-9
TrEMBLA0A022QKX21e-136A0A022QKX2_ERYGU; Uncharacterized protein (Fragment)
STRINGGSMUA_Achr3P04310_0011e-40(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6044436
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21970.11e-36NF-YB family protein